Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SKA81231.1 | SKA81239.1 | SAMN02745166_00734 | SAMN02745166_00735 | Hypothetical protein. | Hypothetical protein. | 0.493 |
| SKA81231.1 | rtcA | SAMN02745166_00734 | SAMN02745166_00733 | Hypothetical protein. | RNA 3'-terminal phosphate cyclase (ATP); Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | 0.578 |
| SKA81231.1 | rtcB | SAMN02745166_00734 | SAMN02745166_00736 | Hypothetical protein. | tRNA-splicing ligase RtcB; Belongs to the RtcB family. | 0.421 |
| SKA81239.1 | SKA81231.1 | SAMN02745166_00735 | SAMN02745166_00734 | Hypothetical protein. | Hypothetical protein. | 0.493 |
| SKA81239.1 | rtcB | SAMN02745166_00735 | SAMN02745166_00736 | Hypothetical protein. | tRNA-splicing ligase RtcB; Belongs to the RtcB family. | 0.645 |
| SKA81252.1 | SKA81278.1 | SAMN02745166_00737 | SAMN02745166_00738 | SS-A/Ro ribonucleoprotein. | Transcriptional regulatory protein RtcR. | 0.862 |
| SKA81252.1 | SKA99756.1 | SAMN02745166_00737 | SAMN02745166_03021 | SS-A/Ro ribonucleoprotein. | BNR repeat-like domain-containing protein. | 0.613 |
| SKA81252.1 | rtcA | SAMN02745166_00737 | SAMN02745166_00733 | SS-A/Ro ribonucleoprotein. | RNA 3'-terminal phosphate cyclase (ATP); Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | 0.606 |
| SKA81252.1 | rtcB | SAMN02745166_00737 | SAMN02745166_00736 | SS-A/Ro ribonucleoprotein. | tRNA-splicing ligase RtcB; Belongs to the RtcB family. | 0.547 |
| SKA81278.1 | SKA81252.1 | SAMN02745166_00738 | SAMN02745166_00737 | Transcriptional regulatory protein RtcR. | SS-A/Ro ribonucleoprotein. | 0.862 |
| SKA81278.1 | rtcA | SAMN02745166_00738 | SAMN02745166_00733 | Transcriptional regulatory protein RtcR. | RNA 3'-terminal phosphate cyclase (ATP); Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | 0.837 |
| SKA81278.1 | rtcB | SAMN02745166_00738 | SAMN02745166_00736 | Transcriptional regulatory protein RtcR. | tRNA-splicing ligase RtcB; Belongs to the RtcB family. | 0.644 |
| SKA86657.1 | rtcA | SAMN02745166_01327 | SAMN02745166_00733 | Hypothetical protein. | RNA 3'-terminal phosphate cyclase (ATP); Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | 0.637 |
| SKA86657.1 | rtcB | SAMN02745166_01327 | SAMN02745166_00736 | Hypothetical protein. | tRNA-splicing ligase RtcB; Belongs to the RtcB family. | 0.412 |
| SKA99756.1 | SKA81252.1 | SAMN02745166_03021 | SAMN02745166_00737 | BNR repeat-like domain-containing protein. | SS-A/Ro ribonucleoprotein. | 0.613 |
| SKA99756.1 | rtcB | SAMN02745166_03021 | SAMN02745166_00736 | BNR repeat-like domain-containing protein. | tRNA-splicing ligase RtcB; Belongs to the RtcB family. | 0.410 |
| rtcA | SKA81231.1 | SAMN02745166_00733 | SAMN02745166_00734 | RNA 3'-terminal phosphate cyclase (ATP); Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | Hypothetical protein. | 0.578 |
| rtcA | SKA81252.1 | SAMN02745166_00733 | SAMN02745166_00737 | RNA 3'-terminal phosphate cyclase (ATP); Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | SS-A/Ro ribonucleoprotein. | 0.606 |
| rtcA | SKA81278.1 | SAMN02745166_00733 | SAMN02745166_00738 | RNA 3'-terminal phosphate cyclase (ATP); Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | Transcriptional regulatory protein RtcR. | 0.837 |
| rtcA | SKA86657.1 | SAMN02745166_00733 | SAMN02745166_01327 | RNA 3'-terminal phosphate cyclase (ATP); Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing. | Hypothetical protein. | 0.637 |
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