STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA81798.1Xylose isomerase-like TIM barrel. (332 aa)    
Predicted Functional Partners:
SKA93278.1
Putative heme-binding domain-containing protein.
  
     0.770
SKA77924.1
Trehalose utilisation.
  
     0.768
SKA86072.1
Putative heme-binding domain-containing protein.
  
     0.767
SKA88774.1
Putative heme-binding domain-containing protein.
  
     0.764
SKB03537.1
Protein of unknown function.
  
     0.754
SKA96883.1
Protein of unknown function.
  
     0.753
SKB05257.1
FG-GAP repeat-containing protein.
  
     0.752
SKA93326.1
Protein of unknown function.
  
     0.742
SKB09006.1
Putative membrane-bound dehydrogenase domain-containing protein.
  
     0.741
SKA93325.1
Protein of unknown function.
  
     0.715
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.