STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA86650.1TIGR03790 family protein. (536 aa)    
Predicted Functional Partners:
SKA93198.1
PAS domain S-box-containing protein.
   
 0.816
SKA80276.1
Signal transduction histidine kinase.
    
 0.792
SKB09088.1
Response regulator receiver domain-containing protein.
   
 0.784
SKB03669.1
Organic solvent tolerance protein.
  
     0.752
SKA76276.1
Hypothetical protein.
  
     0.744
SKA86645.1
Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase.
       0.741
SKA84408.1
Hypothetical protein.
  
     0.738
SKB03493.1
Hypothetical protein.
  
     0.736
SKA92670.1
3D (Asp-Asp-Asp) domain-containing protein.
  
     0.734
SKB01541.1
General secretion pathway protein D; Belongs to the bacterial secretin family.
  
 
  0.731
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.