STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA88160.1Protein of unknown function. (439 aa)    
Predicted Functional Partners:
SKA91687.1
Penicillin-binding protein 1A.
   
 
 0.941
SKA88199.1
Cytochrome C oxidase, cbb3-type, subunit III.
 
     0.798
SKA90007.1
Planctomycete cytochrome C.
  
    0.778
SKB04155.1
Ca-dependent carbohydrate-binding module xylan-binding.
  
    0.778
SKA96554.1
Planctomycete cytochrome C.
  
    0.777
SKB05406.1
Planctomycete cytochrome C.
  
    0.777
SKA89826.1
Protein of unknown function.
  
     0.774
SKA96893.1
Planctomycete cytochrome C.
  
     0.774
SKA96924.1
Planctomycete cytochrome C.
  
    0.772
SKA77849.1
Pre-peptidase C-terminal domain-containing protein.
  
     0.771
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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