STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA89995.1Hypothetical protein. (191 aa)    
Predicted Functional Partners:
SKB02779.1
Major Facilitator Superfamily protein.
  
     0.729
SKB00355.1
Zinc protease; Belongs to the peptidase M16 family.
  
     0.580
SKA80314.1
PAS domain S-box-containing protein.
  
     0.578
SKA78054.1
PAS domain S-box-containing protein.
  
     0.553
SKA96191.1
Signal transduction histidine kinase.
  
     0.546
SKB06440.1
PAS domain S-box-containing protein.
  
     0.525
SKA76967.1
Smr domain-containing protein.
  
     0.516
SKA92225.1
Response regulator receiver domain-containing protein.
  
     0.501
SKB00678.1
Response regulator receiver domain-containing protein.
  
     0.492
SKA90000.1
Protein of unknown function.
       0.424
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.