STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA91811.1Chromosome partitioning protein. (296 aa)    
Predicted Functional Partners:
SKB08601.1
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
 
 
 0.941
SKA96279.1
Chromosome partitioning protein.
  
     0.775
SKA91807.1
Hypothetical protein.
       0.714
SKA91800.1
Protein of unknown function DUF91.
       0.615
dnaA
Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
 
 0.594
SKA81017.1
FtsK/SpoIIIE family protein.
  
  
 0.550
SKA91816.1
Hypothetical protein.
       0.527
SKA91794.1
Protein of unknown function.
       0.469
SKA98602.1
Vitamin B12 transporter.
    
   0.467
SKA91821.1
Calcineurin-like phosphoesterase superfamily domain-containing protein.
       0.439
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.