STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA92082.1Type II secretory pathway component GspD/PulD (secretin); Belongs to the bacterial secretin family. (674 aa)    
Predicted Functional Partners:
SKA92122.1
Type IV pilus assembly protein PilC.
 
    0.758
SKB00514.1
PEP-CTERM protein-sorting domain-containing protein.
  
    0.717
SKB06462.1
PAP2 superfamily protein.
  
     0.678
SKA92087.1
Twitching motility protein PilT.
 
     0.670
SKA92332.1
PEP-CTERM protein-sorting domain-containing protein.
  
     0.659
SKB03060.1
Tetratricopeptide repeat-containing protein.
  
    0.656
SKA89075.1
PEP-CTERM protein-sorting domain-containing protein.
  
    0.653
SKA94298.1
PEP-CTERM protein-sorting domain-containing protein.
  
     0.653
SKB04229.1
PEP-CTERM protein-sorting domain-containing protein.
  
     0.639
SKA88747.1
PEP-CTERM protein-sorting domain-containing protein.
  
     0.633
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.