STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA93116.1MSHA biogenesis protein MshM. (279 aa)    
Predicted Functional Partners:
SKA93131.1
Polymer biosynthesis protein, WecB/TagA/CpsF family; Belongs to the glycosyltransferase 26 family.
       0.775
SKA93143.1
Serine O-acetyltransferase.
       0.775
SKA93123.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.773
SKA93154.1
Hypothetical protein.
       0.773
SKA93161.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.773
SKA93110.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
 
     0.682
SKB06889.1
Exosortase.
 
    0.600
SKA93166.1
Signal transduction histidine kinase.
       0.557
SKA93094.1
SLBB domain-containing protein.
 
     0.532
SKB05792.1
Exosortase.
 
    0.460
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.