STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA93241.1Predicted pyrophosphatase or phosphodiesterase, AlkP superfamily. (391 aa)    
Predicted Functional Partners:
SKA93246.1
Methyltransferase, FkbM family.
       0.773
SKA93232.1
Transferase hexapeptide (six repeat-containing protein).
    
  0.755
SKA93237.1
Anti-anti-sigma factor.
       0.686
SKA93206.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
       0.620
SKA93251.1
PQQ-like domain-containing protein.
       0.574
SKA93256.1
Glycine cleavage system H protein.
       0.499
SKA93201.1
Glycosyl transferase 4-like domain-containing protein.
    
  0.466
SKA93188.1
Haem-NO-binding.
       0.453
SKA93198.1
PAS domain S-box-containing protein.
       0.453
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.