STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA93291.1Radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family. (408 aa)    
Predicted Functional Partners:
SKA76873.1
4Fe-4S binding domain-containing protein.
 
  
 0.830
SKA75849.1
Squalene-hopene/tetraprenyl-beta-curcumene cyclase.
 
   
 0.795
SKA90696.1
Geranylgeranyl pyrophosphate synthase.
 
   
 0.790
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.784
SKA82581.1
PQQ-like domain-containing protein.
  
     0.768
SKA89779.1
Pyruvate:ferredoxin oxidoreductase, delta subunit.
  
   
 0.765
SKB08798.1
Hypothetical protein.
  
     0.757
SKB07455.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
     0.751
SKA99464.1
Hypothetical protein.
  
     0.750
SKA97966.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
     0.740
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.