STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA93301.1Hypothetical protein. (261 aa)    
Predicted Functional Partners:
SKA93198.1
PAS domain S-box-containing protein.
    
  0.728
SKA80276.1
Signal transduction histidine kinase.
    
  0.705
SKA93295.1
Hypothetical protein.
       0.689
SKA93308.1
Hypothetical protein.
      
0.648
SKA92225.1
Response regulator receiver domain-containing protein.
  
 
  0.647
SKA79844.1
Uncharacterized protein YPO0396.
   
   0.588
SKA77643.1
Tetratricopeptide (TPR) repeat.
  
 0.505
SKA96391.1
TPR repeat-containing protein.
  
 0.419
SKA93291.1
Radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family.
       0.418
SKA77879.1
Tetratricopeptide repeat.
  
  0.405
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.