STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA96679.1Glutamine cyclotransferase. (213 aa)    
Predicted Functional Partners:
SKA96674.1
Hypothetical protein.
 
     0.948
SKA96668.1
Predicted dithiol-disulfide oxidoreductase, DUF899 family.
 
     0.892
SKA96662.1
Hypothetical protein.
       0.526
SKB00347.1
FAD/FMN-containing dehydrogenase.
  
 
   0.477
SKA76389.1
Hypothetical protein.
  
     0.459
SKA77968.1
DNA-binding transcriptional regulator, MarR family.
  
     0.426
SKA96656.1
FAD dependent oxidoreductase.
       0.423
SKA76007.1
PPIC-type PPIASE domain-containing protein.
  
     0.422
SKA84599.1
Glycolate oxidase.
    
   0.403
SKB08395.1
Glycolate oxidase.
    
   0.403
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.