STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA97962.1NlpC/P60 family protein. (438 aa)    
Predicted Functional Partners:
SKA92944.1
N-acetylmuramoyl-L-alanine amidase.
  
 
 0.594
aspS
aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
       0.580
SKA80276.1
Signal transduction histidine kinase.
  
  
 0.546
SKA93198.1
PAS domain S-box-containing protein.
  
  
 0.529
SKA97953.1
Putative ABC transport system ATP-binding protein.
   
   0.522
SKA82641.1
PAS domain S-box-containing protein.
  
  
 0.499
SKA81723.1
Two-component system, chemotaxis family, sensor kinase CheA.
  
  
 0.498
SKA92417.1
LysM domain-containing protein.
  
  
 0.494
SKA84211.1
NACHT domain-containing protein.
  
 
 0.491
SKB09088.1
Response regulator receiver domain-containing protein.
  
  
 0.489
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.