STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA99282.1Biopolymer transport protein ExbB. (261 aa)    
Predicted Functional Partners:
SKB02283.1
Biopolymer transport protein ExbD.
  
   0.861
SKB04890.1
Biopolymer transport protein ExbD.
  
   0.826
SKA91917.1
Outer membrane transport energization protein ExbD.
  
   0.825
SKA99284.1
TonB protein C-terminal.
       0.786
SKA99286.1
Hypothetical protein.
       0.786
SKB06834.1
Biopolymer transport protein ExbB.
  
     0.775
SKB02281.1
Biopolymer transport protein ExbB.
  
     0.774
SKB04892.1
Outer membrane transport energization protein ExbB.
  
     0.772
SKB04894.1
Biopolymer transport protein ExbB.
  
     0.753
SKB05158.1
Biopolymer transport protein ExbD.
 
   0.744
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.