STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA99545.1PDZ domain-containing protein. (375 aa)    
Predicted Functional Partners:
secF
SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
   
 
 0.655
SKA99551.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.550
SKA77643.1
Tetratricopeptide (TPR) repeat.
   
 0.521
SKA84211.1
NACHT domain-containing protein.
  
 0.515
SKA99549.1
Hypothetical protein.
       0.489
SKA99540.1
ATP-dependent Lon protease.
   
  0.482
SKA89244.1
Tetratricopeptide repeat-containing protein; Belongs to the AAA ATPase family.
    
 0.460
SKB04630.1
Tetratricopeptide repeat-containing protein; Belongs to the AAA ATPase family.
    
 0.460
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
    
  0.433
SKA82641.1
PAS domain S-box-containing protein.
  
  
 0.422
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.