STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA99840.1Uncharacterized protein YjbI, contains pentapeptide repeats. (395 aa)    
Predicted Functional Partners:
SKB09088.1
Response regulator receiver domain-containing protein.
  
 
 0.579
SKA96945.1
FHA domain-containing protein.
   
 
  0.543
SKA93198.1
PAS domain S-box-containing protein.
  
 0.471
bklc2
Tetratricopeptide repeat-containing protein.
  
     0.449
SKA92254.1
PAS domain S-box-containing protein.
    
 0.448
SKB00811.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.446
SKA77643.1
Tetratricopeptide (TPR) repeat.
 
  
 0.435
SKA79685.1
Topoisomerase-4 subunit B.
    
 
 0.422
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
    
 
 0.422
SKA92239.1
GAF domain-containing protein.
     
 0.412
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.