STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB00650.1DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (298 aa)    
Predicted Functional Partners:
SKA88571.1
LysR family transcriptional regulator, transcriptional activator of nhaA; Belongs to the LysR transcriptional regulatory family.
  
     0.696
ilvD-2
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
       0.547
SKB00647.1
PEP-CTERM protein-sorting domain-containing protein.
       0.519
SKA75952.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.421
SKB00666.1
5'-nucleotidase /3'-nucleotidase.
       0.405
SKB00668.1
Predicted endonuclease; Belongs to the UPF0102 family.
       0.405
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.