STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB01241.1Glycosyltransferase involved in cell wall bisynthesis. (395 aa)    
Predicted Functional Partners:
SKB05775.1
Heparinase II/III-like protein.
  
     0.742
SKA91692.1
GDP-mannose 6-dehydrogenase.
    0.708
SKB01238.1
Type II secretory pathway, component PulF.
       0.625
SKB01245.1
Arylsulfatase A.
       0.548
SKB00596.1
sucrose-6F-phosphate phosphohydrolase.
  
 0.526
SKB01006.1
Maltose alpha-D-glucosyltransferase/ alpha-amylase.
    
 0.497
SKB01235.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
       0.450
SKA90483.1
Protoporphyrinogen oxidase.
  
     0.440
SKB02375.1
Capsular exopolysaccharide family.
 
  
 0.438
SKA99206.1
O-antigen ligase.
  
 
  0.436
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.