STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB02052.1Peptidylglycine monooxygenase. (367 aa)    
Predicted Functional Partners:
SKA76809.1
Planctomycete cytochrome C.
  
 
  0.835
SKA92779.1
Planctomycete cytochrome C.
  
 
  0.833
SKB01060.1
Planctomycete cytochrome C.
  
 
  0.833
SKB01058.1
Planctomycete cytochrome C.
  
 
  0.828
SKB04807.1
Planctomycete cytochrome C.
  
 
  0.827
SKA88620.1
Planctomycete cytochrome C.
  
 
  0.825
SKA98423.1
Planctomycete cytochrome C.
  
 
  0.822
SKA99510.1
Planctomycete cytochrome C.
  
 
  0.820
SKA86499.1
Planctomycete cytochrome C.
  
 
  0.812
SKB02378.1
Planctomycete cytochrome C.
  
 
  0.806
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.