STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB02954.1Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. (280 aa)    
Predicted Functional Partners:
SKB02957.1
Rod shape-determining protein MreB.
 
 
 0.982
SKB02947.1
Penicillin-binding protein 2.
 
 
 0.941
SKB06801.1
Penicillin-binding protein 2.
 
 
 0.876
SKA76310.1
Glucosyl-3-phosphoglycerate synthase.
  
 
 0.839
SKB07462.1
Rod shape determining protein RodA; Belongs to the SEDS family.
 
  
 0.765
SKA77223.1
DNA repair protein RadC; Belongs to the UPF0758 family.
  
  
 0.743
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation; Belongs to the MurB family.
 
  
 0.735
SKA92394.1
Stage V sporulation protein D (sporulation-specific penicillin-binding protein).
 
 
 0.610
SKA91687.1
Penicillin-binding protein 1A.
  
 
 
 0.578
SKA94198.1
Septum formation protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
  
  
 0.557
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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