STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB03006.1Hypothetical protein. (840 aa)    
Predicted Functional Partners:
SKB06004.1
Cytochrome c.
  
     0.762
SKB03008.1
Neutral/alkaline non-lysosomal ceramidase, N-terminal.
 
     0.745
SKA95264.1
Concanavalin A-like lectin/glucanases superfamily protein.
  
     0.742
SKA77530.1
Pectate lyase, PelA/Pel-15E family.
  
     0.741
SKA85488.1
Pectic acid lyase.
  
     0.731
SKA90874.1
Hypothetical protein.
  
     0.725
SKA86693.1
Acetyl xylan esterase (AXE1).
  
     0.669
SKA96868.1
Calcineurin-like phosphoesterase.
  
     0.660
SKB08798.1
Hypothetical protein.
  
     0.651
SKA82581.1
PQQ-like domain-containing protein.
  
     0.644
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.