STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB03746.1Phytoene dehydrogenase-related protein. (522 aa)    
Predicted Functional Partners:
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
  
  0.965
SKB03750.1
Protein of unknown function.
 
     0.904
SKB03752.1
Protein of unknown function.
 
     0.871
SKA88409.1
DNA binding domain-containing protein, excisionase family.
 
     0.587
SKA76398.1
Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family.
  
     0.554
SKA93311.1
Uroporphyrinogen III methyltransferase / synthase.
  
 
 0.532
SKB03744.1
Ferritin; Iron-storage protein.
       0.517
SKA81278.1
Transcriptional regulatory protein RtcR.
  
     0.496
SKB07250.1
Chlorite dismutase.
  
 
 0.473
SKB03751.1
Hypothetical protein.
       0.447
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.