STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB04757.1Selenocysteine lyase/Cysteine desulfurase. (388 aa)    
Predicted Functional Partners:
SKB00149.1
Nitrogen fixation protein NifU.
 
 0.927
SKB08998.1
Nitrogen fixation protein NifU.
  
 0.838
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.792
SKA97212.1
Fe-S cluster assembly ATP-binding protein.
 
  
 0.789
SKA97220.1
Fe-S cluster assembly protein SufB.
 
 
 0.758
SKA97235.1
Fe-S cluster assembly protein SufD.
 
 
 0.757
SKA98145.1
Thioredoxin reductase (NADPH).
  
 
  0.690
SKA76788.1
NADH dehydrogenase.
    
  0.682
SKB04760.1
Hypothetical protein.
       0.655
SKA78079.1
Cysteine desulfuration protein SufE.
  
 0.647
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.