STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB04826.1Predicted metal-dependent hydrolase, TIM-barrel fold. (308 aa)    
Predicted Functional Partners:
SKB06678.1
Regulator of RNase E activity RraA.
 
   
 0.715
SKB05974.1
Hypothetical protein.
 
  
 0.676
SKB04824.1
Acetylornithine deacetylase.
       0.668
SKA96921.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.630
SKA82717.1
BNR repeat-like domain-containing protein.
  
     0.620
SKA92270.1
L-alanine-DL-glutamate epimerase.
 
  
 0.613
SKB08223.1
Hypothetical protein.
  
     0.596
SKB05778.1
Threonine dehydrogenase.
    
  0.582
SKA86693.1
Acetyl xylan esterase (AXE1).
  
     0.552
SKB04782.1
Nucleoside-diphosphate-sugar epimerase.
  
  
  0.503
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.