STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB04894.1Biopolymer transport protein ExbB. (499 aa)    
Predicted Functional Partners:
SKB04890.1
Biopolymer transport protein ExbD.
 
   0.949
SKB04878.1
Protein TonB.
 
   0.940
SKB04877.1
Tetratricopeptide repeat-containing protein.
 
     0.874
SKB02283.1
Biopolymer transport protein ExbD.
  
   0.840
SKA91917.1
Outer membrane transport energization protein ExbD.
  
   0.790
SKB06837.1
Biopolymer transport protein ExbD.
  
   0.782
SKA99282.1
Biopolymer transport protein ExbB.
  
     0.753
SKB04892.1
Outer membrane transport energization protein ExbB.
 
    
0.734
SKB04897.1
Protein of unknown function.
       0.689
SKB05158.1
Biopolymer transport protein ExbD.
 
   0.661
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.