STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB05152.1Neutral/alkaline non-lysosomal ceramidase, N-terminal. (468 aa)    
Predicted Functional Partners:
SKB00052.1
Putative membrane-bound dehydrogenase domain-containing protein.
 
     0.931
SKB03167.1
Putative membrane-bound dehydrogenase domain-containing protein.
 
     0.803
SKA75958.1
Hypothetical protein.
  
     0.773
SKB00108.1
Alpha/beta hydrolase family protein.
  
     0.770
SKB08300.1
Predicted dehydrogenase.
  
     0.769
SKA90580.1
Predicted dehydrogenase.
  
     0.764
SKA88396.1
Sugar phosphate isomerase/epimerase.
  
     0.760
SKB01180.1
BNR repeat-like domain-containing protein.
  
     0.755
SKA99589.1
Hypothetical protein.
  
     0.743
SKA96342.1
N-acetylglucosamine-6-phosphate deacetylase.
  
 0.742
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.