STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB05706.1Ca2+-binding protein, EF-hand superfamily. (771 aa)    
Predicted Functional Partners:
SKB05704.1
MOSC domain-containing protein YiiM.
       0.773
SKA96412.1
Ig-like domain (group 2).
  
 
   0.767
SKA77885.1
Ig-like domain (group 2).
  
 
   0.765
SKA88199.1
Cytochrome C oxidase, cbb3-type, subunit III.
  
     0.763
SKB06432.1
Protein of unknown function.
  
 
   0.763
SKA77849.1
Pre-peptidase C-terminal domain-containing protein.
  
     0.760
SKA79798.1
WD domain-containing protein, G-beta repeat-containing protein.
  
 
   0.753
SKA88160.1
Protein of unknown function.
  
     0.751
SKA96893.1
Planctomycete cytochrome C.
  
 
   0.751
SKA99425.1
Protein of unknown function.
  
     0.745
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.