SKB05899.1 protein (Prosthecobacter debontii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SKB05899.1

Glycosyltransferase involved in cell wall bisynthesis. (371 aa)

Predicted Functional Partners:

SKB05873.1

0.925

SKB05892.1

0.888

SKB05921.1

0.885

SKB05917.1

0.884

SKB05911.1

0.867

SKB05913.1

0.809

SKA92533.1

0.773

SKB05904.1

0.768

SKA77023.1

0.767

SKA92506.1

0.765

Your Current Organism:

Prosthecobacter debontii

NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SKA77023.1	SKA92506.1	SAMN02745166_00290	SAMN02745166_01909	Glycosyltransferase involved in cell wall bisynthesis.	Glycosyltransferase involved in cell wall bisynthesis.	0.760
SKA77023.1	SKB05892.1	SAMN02745166_00290	SAMN02745166_04363	Glycosyltransferase involved in cell wall bisynthesis.	Glycosyltransferase involved in cell wall bisynthesis.	0.517
SKA77023.1	SKB05899.1	SAMN02745166_00290	SAMN02745166_04365	Glycosyltransferase involved in cell wall bisynthesis.	Glycosyltransferase involved in cell wall bisynthesis.	0.767
SKA77023.1	SKB05911.1	SAMN02745166_00290	SAMN02745166_04368	Glycosyltransferase involved in cell wall bisynthesis.	Glycosyltransferase involved in cell wall bisynthesis.	0.440
SKA77023.1	SKB05913.1	SAMN02745166_00290	SAMN02745166_04369	Glycosyltransferase involved in cell wall bisynthesis.	Glycosyltransferase involved in cell wall bisynthesis.	0.746
SKA77023.1	SKB05921.1	SAMN02745166_00290	SAMN02745166_04371	Glycosyltransferase involved in cell wall bisynthesis.	Glycosyl transferases group 1.	0.439
SKA92506.1	SKA77023.1	SAMN02745166_01909	SAMN02745166_00290	Glycosyltransferase involved in cell wall bisynthesis.	Glycosyltransferase involved in cell wall bisynthesis.	0.760
SKA92506.1	SKB05873.1	SAMN02745166_01909	SAMN02745166_04362	Glycosyltransferase involved in cell wall bisynthesis.	Poly(glycerol-phosphate) alpha-glucosyltransferase.	0.659
SKA92506.1	SKB05892.1	SAMN02745166_01909	SAMN02745166_04363	Glycosyltransferase involved in cell wall bisynthesis.	Glycosyltransferase involved in cell wall bisynthesis.	0.582
SKA92506.1	SKB05899.1	SAMN02745166_01909	SAMN02745166_04365	Glycosyltransferase involved in cell wall bisynthesis.	Glycosyltransferase involved in cell wall bisynthesis.	0.765
SKA92506.1	SKB05911.1	SAMN02745166_01909	SAMN02745166_04368	Glycosyltransferase involved in cell wall bisynthesis.	Glycosyltransferase involved in cell wall bisynthesis.	0.449
SKA92506.1	SKB05913.1	SAMN02745166_01909	SAMN02745166_04369	Glycosyltransferase involved in cell wall bisynthesis.	Glycosyltransferase involved in cell wall bisynthesis.	0.736
SKA92506.1	SKB05917.1	SAMN02745166_01909	SAMN02745166_04370	Glycosyltransferase involved in cell wall bisynthesis.	Glycosyltransferase involved in cell wall bisynthesis.	0.488
SKA92506.1	SKB05921.1	SAMN02745166_01909	SAMN02745166_04371	Glycosyltransferase involved in cell wall bisynthesis.	Glycosyl transferases group 1.	0.514
SKA92533.1	SKB05873.1	SAMN02745166_01912	SAMN02745166_04362	Glycosyltransferase involved in cell wall bisynthesis.	Poly(glycerol-phosphate) alpha-glucosyltransferase.	0.720
SKA92533.1	SKB05892.1	SAMN02745166_01912	SAMN02745166_04363	Glycosyltransferase involved in cell wall bisynthesis.	Glycosyltransferase involved in cell wall bisynthesis.	0.599
SKA92533.1	SKB05899.1	SAMN02745166_01912	SAMN02745166_04365	Glycosyltransferase involved in cell wall bisynthesis.	Glycosyltransferase involved in cell wall bisynthesis.	0.773
SKA92533.1	SKB05911.1	SAMN02745166_01912	SAMN02745166_04368	Glycosyltransferase involved in cell wall bisynthesis.	Glycosyltransferase involved in cell wall bisynthesis.	0.456
SKA92533.1	SKB05913.1	SAMN02745166_01912	SAMN02745166_04369	Glycosyltransferase involved in cell wall bisynthesis.	Glycosyltransferase involved in cell wall bisynthesis.	0.757
SKA92533.1	SKB05917.1	SAMN02745166_01912	SAMN02745166_04370	Glycosyltransferase involved in cell wall bisynthesis.	Glycosyltransferase involved in cell wall bisynthesis.	0.456