STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB06846.1Protein of unknown function. (457 aa)    
Predicted Functional Partners:
SKA99438.1
Hypothetical protein.
   
 0.979
SKB01254.1
Glycosyltransferase, GT2 family.
  
 
 0.794
SKB06034.1
Hypothetical protein.
  
     0.697
SKB06837.1
Biopolymer transport protein ExbD.
       0.588
SKB06840.1
Hypothetical protein.
       0.588
SKB06843.1
Hypothetical protein.
       0.588
SKA81475.1
Type II secretory pathway, component PulJ.
    
 0.583
SKB01006.1
Maltose alpha-D-glucosyltransferase/ alpha-amylase.
     
 0.548
SKB04102.1
Hypothetical protein.
  
     0.547
SKA97276.1
FG-GAP repeat-containing protein.
  
 
  0.530
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.