STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB06897.1Oxygen-independent coproporphyrinogen-3 oxidase. (448 aa)    
Predicted Functional Partners:
SKB06895.1
Hypothetical protein.
       0.782
SKA97893.1
Hypothetical protein.
  
     0.748
SKA77500.1
Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.741
SKA77564.1
PQQ-like domain-containing protein.
  
     0.737
SKB00370.1
Acyl-CoA reductase.
  
     0.734
SKB06493.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
     0.730
SKB06494.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
  
     0.730
SKA99707.1
PQQ-like domain-containing protein.
  
     0.724
SKA82581.1
PQQ-like domain-containing protein.
  
     0.723
SKA80756.1
PQQ-like domain-containing protein.
  
     0.722
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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