STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB07235.1Peptidase M60, enhancin and enhancin-like. (736 aa)    
Predicted Functional Partners:
SKB01254.1
Glycosyltransferase, GT2 family.
 
  
 0.823
SKA84942.1
Fibronectin type III domain-containing protein.
  
    0.763
SKA94688.1
SMP-30/Gluconolaconase/LRE-like region-containing protein.
  
     0.751
SKA81544.1
Hypothetical protein.
  
     0.741
SKA88815.1
Collagen triple helix repeat-containing protein.
  
     0.738
SKA93308.1
Hypothetical protein.
  
     0.737
SKB02343.1
Sialidase-1.
  
     0.698
SKA81953.1
Alpha/beta hydrolase family protein.
  
     0.652
SKA85406.1
O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain.
  
     0.626
SKA96019.1
Protein of unknown function.
  
  
 0.615
Your Current Organism:
Prosthecobacter debontii
NCBI taxonomy Id: 48467
Other names: ATCC 700200, P. debontii, Prosthecobacter FC3, Prosthecobacter sp. FC-3, strain FC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.