STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UFO1_0653PFAM: protein of unknown function DUF362, 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein; KEGG: 4Fe-4S ferredoxin. (368 aa)    
Predicted Functional Partners:
UFO1_0652
Hypothetical protein.
       0.592
UFO1_0300
PFAM: protein of unknown function DUF362, 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein; KEGG: (Fe-S)-binding protein.
 
     0.564
UFO1_3234
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; KEGG: ferredoxin.
  
  
 0.510
UFO1_4474
PFAM: Protein of unknown function DUF3842; KEGG: hypothetical protein.
  
     0.483
UFO1_0654
KEGG: hypothetical protein.
       0.468
UFO1_0655
KEGG: hypothetical protein.
       0.462
larC
UPF0272 protein; Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2+), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor-dependent enzymes. Belongs to the LarC family.
 
    0.425
UFO1_0686
PFAM: NADPH-dependent FMN reductase; KEGG: NADPH-dependent FMN reductase.
 
     0.422
UFO1_1187
PFAM: nitroreductase, 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein; KEGG: nitroreductase.
 
  
 0.422
UFO1_0760
KEGG: hypothetical protein; TIGRFAM: protein of unknown function DUF111; PFAM: protein of unknown function DUF111.
 
    0.418
Your Current Organism:
Pelosinus sp. UFO1
NCBI taxonomy Id: 484770
Other names: P. sp. UFO1, Pelosinus lilaceae
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