STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UFO1_1465PFAM: glucose-inhibited division protein A; KEGG: glucose-inhibited division protein A. (426 aa)    
Predicted Functional Partners:
UFO1_2015
KEGG: hypothetical protein.
 
    0.784
UFO1_2542
Undecaprenyl pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
    0.641
UFO1_4257
PFAM: protein of unknown function DUF1779; KEGG: Protein of unknown function (DUF1779).
  
     0.625
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
    0.609
topB
DNA topoisomerase III; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA su [...]
  
    0.609
UFO1_4126
PFAM: Protein of unknown function YvrJ; KEGG: hypothetical protein.
  
     0.579
UFO1_0491
KEGG: spore cortex biosynthesis protein YabQ; TIGRFAM: spore cortex biosynthesis protein YabQ; PFAM: Spore cortex biosynthesis protein, YabQ-like protein.
  
    0.576
UFO1_2688
PFAM: Domain of unknown function DUF4342; KEGG: ubiquitin-associated-domain-containing protein.
  
     0.559
UFO1_4069
Hypothetical protein; KEGG: PDZ/DHR/GLGF domain-containing protein.
  
     0.536
UFO1_4085
KEGG: hypothetical protein.
  
     0.524
Your Current Organism:
Pelosinus sp. UFO1
NCBI taxonomy Id: 484770
Other names: P. sp. UFO1, Pelosinus lilaceae
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