STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UFO1_1819Transcriptional regulator, LysR family; PFAM: LysR substrate-binding protein, regulatory protein LysR; KEGG: LysR family transcriptional regulator. (306 aa)    
Predicted Functional Partners:
UFO1_3943
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR, LysR substrate-binding protein; KEGG: LysR family transcriptional regulator.
  
     0.683
UFO1_1820
Formate dehydrogenase, alpha subunit; SMART: molybdopterin oxidoreductase Fe4S4 region; TIGRFAM: formate dehydrogenase, alpha subunit; KEGG: fdhA, formate dehydrogenase subunit alpha; PFAM: molybdopterin oxidoreductase, molybdopterin dinucleotide-binding region, molybdopterin oxidoreductase Fe4S4 region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.502
mobA-2
Molybdopterin-guanine dinucleotide biosynthesis protein A; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor.
     
 0.447
UFO1_1822
PFAM: 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; KEGG: electron transport protein.
       0.401
Your Current Organism:
Pelosinus sp. UFO1
NCBI taxonomy Id: 484770
Other names: P. sp. UFO1, Pelosinus lilaceae
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