STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UFO1_1952PFAM: Protein of unknown function DUF2273; KEGG: hypothetical protein. (76 aa)    
Predicted Functional Partners:
UFO1_1951
PFAM: protein of unknown function DUF322; KEGG: hypothetical protein.
 
     0.924
UFO1_1950
PFAM: protein of unknown function DUF322; KEGG: hypothetical protein.
 
     0.664
UFO1_1947
KEGG: Stage III sporulation protein AF (Spore_III_AF); TIGRFAM: stage III sporulation protein AF; PFAM: Sporulation stage III protein AF.
 
     0.633
nusB
NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
       0.573
UFO1_2535
PFAM: protein of unknown function DUF155; KEGG: hypothetical protein.
  
     0.533
UFO1_4789
KEGG: pro-sigmaK processing inhibitor BofA; TIGRFAM: pro-sigmaK processing inhibitor BofA; PFAM: sigmaK-factor processing regulatory BofA.
  
     0.533
UFO1_1949
PFAM: Stage III sporulation protein AH-like; KEGG: hypothetical protein.
 
     0.530
UFO1_0509
PFAM: Shikimate/quinate 5-dehydrogenase; KEGG: shikimate/quinate 5-dehydrogenase.
  
     0.527
UFO1_2239
PFAM: Late competence development protein ComFB; KEGG: comFB, late competence development protein ComFB.
 
     0.527
UFO1_1946
KEGG: stage III sporulation protein AE; TIGRFAM: stage III sporulation protein AE; PFAM: Sporulation stage III protein AE.
 
     0.502
Your Current Organism:
Pelosinus sp. UFO1
NCBI taxonomy Id: 484770
Other names: P. sp. UFO1, Pelosinus lilaceae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.