STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UFO1_1984PFAM: GerA spore germination protein; KEGG: spoVAF, Stage V sporulation protein AF (SpoVAF). (500 aa)    
Predicted Functional Partners:
UFO1_1980
KEGG: stage V sporulation protein AE; TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein.
 
   
 0.953
UFO1_1979
KEGG: stage V sporulation protein AD; TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein.
 
  
 0.947
UFO1_1978
KEGG: stage V sporulation protein AC; TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein.
 
  
 0.936
UFO1_1983
PFAM: Stage V sporulation protein AE; KEGG: stage V sporulation protein ae.
 
  
 0.917
UFO1_2108
KEGG: stage V sporulation protein AD; TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein.
 
  
 0.853
UFO1_2107
KEGG: sporulation stage V, protein AC; TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein.
 
  
 0.834
UFO1_2109
KEGG: sporulation stage V, protein AE; TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein.
 
   
 0.826
UFO1_1975
RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.816
UFO1_1974
Anti-sigma regulatory factor, serine/threonine protein kinase; TIGRFAM: anti-sigma F factor; KEGG: anti-sigma F factor; SMART: ATP-binding region ATPase domain protein.
 
   
 0.809
UFO1_2717
PFAM: peptidase M63 germination protease; TIGRFAM: spore protease; KEGG: spore protease; HAMAP : Germination protease.
  
    0.801
Your Current Organism:
Pelosinus sp. UFO1
NCBI taxonomy Id: 484770
Other names: P. sp. UFO1, Pelosinus lilaceae
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