STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fniIsopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). (354 aa)    
Predicted Functional Partners:
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
  
 
 0.935
UFO1_1957
PFAM: Polyprenyl synthetase; KEGG: polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 
 0.931
UFO1_4371
D-lactate dehydrogenase (cytochrome); KEGG: FAD/FMN-dependent dehydrogenase; PFAM: FAD linked oxidase domain protein, FAD linked oxidase domain-containing protein, protein of unknown function DUF224 cysteine-rich region domain protein, 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
  
 0.746
UFO1_3024
L-lactate transport; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
  
  
 0.707
UFO1_3107
L-lactate transport; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
  
  
 0.707
UFO1_2025
PFAM: protein of unknown function DUF1614; KEGG: hypothetical protein.
       0.628
UFO1_2022
TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; KEGG: plsC, putative 1-acyl-sn-glycerol-3-phosphate acyltransferase; SMART: phospholipid/glycerol acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
  
  
 0.599
UFO1_2026
KEGG: stage II sporulation protein P; TIGRFAM: stage II sporulation protein P; PFAM: Stage II sporulation P family protein.
       0.587
cmk
TIGRFAM: cytidylate kinase; HAMAP : Cytidylate kinase; KEGG: cmk, putative cytidylate kinase; PFAM: cytidylate kinase region.
  
  
 0.585
UFO1_0265
KEGG: FAD linked oxidase domain-containing protein; PFAM: FAD linked oxidase domain-containing protein, Berberine/berberine domain protein.
  
 0.581
Your Current Organism:
Pelosinus sp. UFO1
NCBI taxonomy Id: 484770
Other names: P. sp. UFO1, Pelosinus lilaceae
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