STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UFO1_2049PFAM: NLP/P60 protein, Peptidoglycan-binding domain 1 protein; KEGG: cell wall-associated hydrolase, invasion-associated protein. (230 aa)    
Predicted Functional Partners:
UFO1_2616
KEGG: N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin.
 
  
 0.711
UFO1_2891
SMART: Tetratricopeptide repeat-containing protein; KEGG: hypothetical protein.
  
 
 0.518
UFO1_0047
KEGG: hypothetical protein.
  
 
 0.512
UFO1_4094
SMART: Tetratricopeptide repeat-containing protein; KEGG: TPR repeat-containing protein.
  
 
 0.512
UFO1_4588
5'-nucleotidase; KEGG: 2',3'-cyclic-nucleotide 2'-phosphodiesterase; PFAM: 5'-Nucleotidase domain-containing protein, metallophosphoesterase; Belongs to the 5'-nucleotidase family.
  
  
 0.457
UFO1_2521
Putative PASTA sensor protein; TIGRFAM: stage V sporulation protein D; PFAM: penicillin-binding protein transpeptidase, Penicillin-binding protein dimerization domain-containing protein, PASTA domain containing protein; KEGG: stage V sporulation protein D; SMART: PASTA domain containing protein.
  
  
 0.451
UFO1_4296
PFAM: polysaccharide deacetylase; KEGG: polysaccharide deacetylase family sporulation protein PdaB.
  
  
 0.437
metG
Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
     
 0.437
UFO1_0838
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: N-acetylmuramoyl-L-alanine amidase; SMART: cell wall hydrolase/autolysin.
 
  
 0.434
UFO1_4072
Protein of unknown function DUF214; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
   
 0.414
Your Current Organism:
Pelosinus sp. UFO1
NCBI taxonomy Id: 484770
Other names: P. sp. UFO1, Pelosinus lilaceae
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