STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UFO1_2365PFAM: polysaccharide deacetylase; KEGG: polysaccharide deacetylase. (296 aa)    
Predicted Functional Partners:
UFO1_2364
KEGG: penicillin-binding protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51, penicillin-binding protein transpeptidase.
       0.548
UFO1_2360
Hypothetical protein; KEGG: glycosyl transferase family 2.
  
  
 0.513
UFO1_3813
TIGRFAM: Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA; KEGG: family 2 glycosyl transferase.
 
  
 0.505
UFO1_1769
Hyaluronan synthase; KEGG: glycosyl transferase family protein; PFAM: glycosyl transferase family 2, chitin synthase.
  
 0.489
UFO1_2783
TIGRFAM: Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA; KEGG: family 2 glycosyl transferase.
 
  
 0.473
UFO1_0047
KEGG: hypothetical protein.
  
  
 0.449
UFO1_4094
SMART: Tetratricopeptide repeat-containing protein; KEGG: TPR repeat-containing protein.
  
  
 0.449
UFO1_2363
Glycosyl transferase, WecB/TagA/CpsF family; Catalyzes the conversion of GlcNAc-PP-undecaprenol into ManNAc-GlcNAc-PP-undecaprenol, the first committed lipid intermediate in the de novo synthesis of teichoic acid.
       0.433
UFO1_2781
Hypothetical protein.
  
  
 0.433
UFO1_2891
SMART: Tetratricopeptide repeat-containing protein; KEGG: hypothetical protein.
  
  
 0.420
Your Current Organism:
Pelosinus sp. UFO1
NCBI taxonomy Id: 484770
Other names: P. sp. UFO1, Pelosinus lilaceae
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