STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UFO1_2534KEGG: CoA-binding protein; PFAM: CoA-binding domain protein; SMART: CoA-binding domain protein. (130 aa)    
Predicted Functional Partners:
UFO1_2533
KEGG: thioredoxin; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain-containing protein; Belongs to the thioredoxin family.
       0.793
UFO1_0068
PFAM: ferric-uptake regulator; KEGG: ferric uptake regulator, Fur family; Belongs to the Fur family.
  
    0.688
UFO1_2535
PFAM: protein of unknown function DUF155; KEGG: hypothetical protein.
       0.583
UFO1_2532
Small GTP-binding protein; KEGG: feoB-1, ferrous iron transport protein B; TIGRFAM: small GTP-binding protein; PFAM: Ferrous iron transport protein B domain-containing protein, nucleoside recognition domain protein.
  
    0.550
UFO1_1916
PFAM: ferric-uptake regulator; KEGG: ferric uptake regulator, Fur family; Belongs to the Fur family.
  
    0.515
UFO1_2664
PFAM: ferric-uptake regulator; KEGG: ferric uptake regulator, fur family; Belongs to the Fur family.
  
    0.515
UFO1_2536
PFAM: arsenate reductase like protein; KEGG: arsenate reductase-like protein; Belongs to the ArsC family.
  
    0.473
UFO1_4250
KEGG: flagellar basal-body rod protein FlgG; TIGRFAM: flagellar basal-body rod protein FlgG, flagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein, flagellar basal body rod protein.
    
   0.459
UFO1_4251
KEGG: Flagellar basal-body rod protein FlgF; TIGRFAM: flagellar basal-body rod protein FlgF, flagellar hook-basal body protein; PFAM: protein of unknown function DUF1078 domain protein, flagellar basal body rod protein.
    
   0.459
Your Current Organism:
Pelosinus sp. UFO1
NCBI taxonomy Id: 484770
Other names: P. sp. UFO1, Pelosinus lilaceae
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