STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UFO1_2549KEGG: hypothetical protein. (111 aa)    
Predicted Functional Partners:
UFO1_2548
Hypothetical protein.
       0.701
UFO1_2550
PFAM: protein of unknown function DUF342; KEGG: hypothetical protein.
       0.621
UFO1_2551
RNA polymerase, sigma 28 subunit, FliA/WhiG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.559
cheD
CheD, deamidase, stimulates methylation of MCP protein; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
       0.527
UFO1_2554
PFAM: CheC domain protein; KEGG: CheC, inhibitor of MCP methylation.
       0.527
rpsB
TIGRFAM: ribosomal protein S2; HAMAP : ribosomal protein S2; KEGG: rpsB, putative 30S ribosomal protein S2; PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
       0.500
UFO1_2552
Hypothetical protein.
       0.483
UFO1_2556
KEGG: CheA signal transduction histidine kinase; PFAM: CheW domain protein, Hpt domain protein, Signal transducing histidine kinase homodimeric, ATP-binding region ATPase domain protein, P2 response regulator binding domain protein; SMART: CheW domain protein, ATP-binding region ATPase domain protein, Hpt domain protein.
       0.457
UFO1_2555
KEGG: cheW, putative chemotaxis protein CheW; PFAM: CheW domain protein; SMART: CheW domain protein.
       0.443
cheB-2
Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
       0.443
Your Current Organism:
Pelosinus sp. UFO1
NCBI taxonomy Id: 484770
Other names: P. sp. UFO1, Pelosinus lilaceae
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