STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UFO1_2758PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: cytochrome c biogenesis protein, transmembrane region. (236 aa)    
Predicted Functional Partners:
UFO1_2759
PFAM: Redoxin domain protein; KEGG: alkyl hydroperoxide reductase.
  
 0.959
UFO1_4043
KEGG: cytochrome c-type biogenesis protein CcsB; TIGRFAM: cytochrome c-type biogenesis protein CcsB; PFAM: cytochrome c assembly protein.
 
  
 0.774
UFO1_4044
PFAM: ResB family protein; KEGG: ResB family protein.
 
  
 0.692
UFO1_2757
PFAM: NADP-dependent oxidoreductase domain; KEGG: hypothetical protein.
       0.689
msrB
PFAM: Methionine sulfoxide reductase B; TIGRFAM: methionine-R-sulfoxide reductase; HAMAP : Peptide methionine sulfoxide reductase msrB; KEGG: methionine-R-sulfoxide reductase.
  
  
 0.650
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
       0.586
UFO1_0854
CoA-disulfide reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase, FAD/NAD(P)-binding domain, pyridine nucleotide-disulfide oxidoreductase dimerization region, SirA-like domain-containing protein, FAD-dependent pyridine nucleotide-disulfide oxidoreductase, Rhodanese-like protein; KEGG: FAD-dependent pyridine nucleotide-disulfide oxidoreductase; SMART: Rhodanese-like protein; Belongs to the sulfur carrier protein TusA family.
 
   
 0.532
UFO1_3787
PFAM: Heavy metal transport/detoxification protein; KEGG: heavy metal transport/detoxification protein.
     
 0.525
hemL
PFAM: aminotransferase class-III; TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; HAMAP : Glutamate-1-semialdehyde 2,1-aminomutase; KEGG: glutamate-1-semialdehyde-2,1-aminomutase.
  
  
 0.515
UFO1_2870
KEGG: rhodanese-like protein; PFAM: Rhodanese-like protein; SMART: Rhodanese-like protein.
     
 0.477
Your Current Organism:
Pelosinus sp. UFO1
NCBI taxonomy Id: 484770
Other names: P. sp. UFO1, Pelosinus lilaceae
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