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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UFO1_2935PFAM: peptidase M50; KEGG: peptidase M50. (295 aa)    
Predicted Functional Partners:
UFO1_2936
PFAM: Peptidase M23; KEGG: peptidase M23.
       0.799
UFO1_1600
PFAM: phosphoribosyltransferase; KEGG: phosphoribosyltransferases.
 
  
 0.624
UFO1_4076
PFAM: peptidase M50; KEGG: membrane peptidase.
  
     0.623
UFO1_1811
PFAM: peptidase M50; KEGG: peptidase M50.
  
     0.609
UFO1_2933
KEGG: hypothetical protein; TIGRFAM: Protein of unknown function DUF2344; PFAM: Protein of unknown function DUF2344.
       0.518
rodA
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
  
  
 0.512
UFO1_2934
TIGRFAM: Conserved hypothetical protein CHP03960, radical SAM; PFAM: Radical SAM domain protein, cobalamin B12-binding domain protein; KEGG: hypothetical protein; SMART: Elongator protein 3/MiaB/NifB.
       0.499
UFO1_2093
KEGG: hypothetical protein.
  
     0.476
UFO1_2603
SMART: cation transporting ATPase domain protein; TIGRFAM: heavy metal translocating P-type ATPase, ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: pacL, cation-transporting ATPase; PFAM: E1-E2 ATPase-associated domain protein, cation transporting ATPase domain protein, Haloacid dehalogenase domain protein hydrolase.
 
    0.449
UFO1_1968
KEGG: spoIIM, stage II sporulation protein M; TIGRFAM: stage II sporulation protein M; PFAM: protein of unknown function DUF95 transmembrane.
 
  
 0.445
Your Current Organism:
Pelosinus sp. UFO1
NCBI taxonomy Id: 484770
Other names: P. sp. UFO1, Pelosinus lilaceae
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