STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UFO1_3799KEGG: transcriptional regulator IclR; PFAM: Transcriptional regulator IclR, regulatory protein IclR; SMART: regulatory protein IclR. (255 aa)    
Predicted Functional Partners:
UFO1_3800
KEGG: kdgA, KHG/KDPG aldolase KdgA; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase.
 
   
 0.672
UFO1_3801
KEGG: 2-dehydro-3-deoxygluconokinase; PFAM: PfkB domain protein.
 
   
 0.644
UFO1_2734
TIGRFAM: Conserved hypothetical protein CHP00370; PFAM: Allophanate hydrolase subunit 1; KEGG: hypothetical protein; SMART: Allophanate hydrolase subunit 1.
  
    0.622
UFO1_2737
TIGRFAM: Conserved hypothetical protein CHP00370; PFAM: Allophanate hydrolase subunit 1; KEGG: allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1.
  
    0.622
UFO1_2733
Urea amidolyase related protein; SMART: Allophanate hydrolase subunit 2; TIGRFAM: urea amidolyase related protein; KEGG: allophanate hydrolase subunit 2; PFAM: Allophanate hydrolase subunit 2.
  
    0.544
UFO1_2736
Urea amidolyase related protein; SMART: Allophanate hydrolase subunit 2; TIGRFAM: urea amidolyase related protein; KEGG: Dur1, allophanate hydrolase subunit 2; PFAM: Allophanate hydrolase subunit 2.
  
    0.544
UFO1_3560
GntR domain protein; KEGG: GntR family transcriptional regulator; PFAM: GntR domain protein, regulatory protein GntR HTH; SMART: GntR domain protein, regulatory protein GntR HTH.
 
  
 0.533
UFO1_3467
Hypothetical protein; KEGG: extra-cytoplasmic solute receptor.
 
  
 0.531
UFO1_4546
KEGG: GntR family transcriptional regulator; PFAM: GntR domain protein, regulatory protein GntR HTH; SMART: regulatory protein GntR HTH.
  
  
 0.526
UFO1_3468
Hypothetical protein; KEGG: aroE1, shikimate dehydrogenase.
 
  
 0.525
Your Current Organism:
Pelosinus sp. UFO1
NCBI taxonomy Id: 484770
Other names: P. sp. UFO1, Pelosinus lilaceae
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