STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UFO1_3811Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; KEGG: xynA, glycosyl hydrolase/beta-1,4-xylanase; SMART: glycoside hydrolase family 10. (581 aa)    
Predicted Functional Partners:
UFO1_3676
Cellulose 1,4-beta-cellobiosidase; KEGG: cel, putative endoglucanase; PFAM: glycoside hydrolase family 9.
 
   
 0.786
UFO1_0933
KEGG: alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; SMART: alpha-L-arabinofuranosidase domain protein.
 
   
 0.769
UFO1_0808
KEGG: Exo-poly-alpha-galacturonosidase; PFAM: glycoside hydrolase family 28, Fibronectin type III domain protein; Belongs to the glycosyl hydrolase 28 family.
 
  
 0.625
UFO1_1595
KEGG: hypothetical protein.
   
 
 0.623
UFO1_0646
KEGG: chiII, chitinase; PFAM: glycoside hydrolase family 18; SMART: chitinase II; Belongs to the glycosyl hydrolase 18 family.
 
   
 0.603
UFO1_1239
KEGG: hypothetical protein.
    
 
 0.568
UFO1_1240
PFAM: glycoside hydrolase family 76; KEGG: hypothetical protein.
    
 
 0.568
UFO1_3813
TIGRFAM: Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA; KEGG: family 2 glycosyl transferase.
     
 0.528
xylA
PFAM: Xylose isomerase domain-containing protein TIM barrel; TIGRFAM: xylose isomerase; HAMAP : Xylose isomerase; KEGG: xylA, xylose isomerase; Belongs to the xylose isomerase family.
 
   
 0.496
UFO1_3814
KEGG: pgaB, outer membrane polysaccharide N-deacetylase; TIGRFAM: Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB; PFAM: polysaccharide deacetylase.
     
 0.486
Your Current Organism:
Pelosinus sp. UFO1
NCBI taxonomy Id: 484770
Other names: P. sp. UFO1, Pelosinus lilaceae
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