STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UFO1_3921PFAM: peptidase M20, peptidase dimerization domain protein; KEGG: glutamate carboxypeptidase. (414 aa)    
Predicted Functional Partners:
UFO1_3922
Anaerobic c4-dicarboxylate antiporter, DcuC family; KEGG: putative anaerobic C4-dicarboxylate transporter; TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: C4-dicarboxylate anaerobic carrier-like protein.
 
     0.592
UFO1_3115
KEGG: hypothetical protein; TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: C4-dicarboxylate anaerobic carrier-like protein.
 
     0.579
UFO1_1591
Anaerobic c4-dicarboxylate antiporter, DcuC family; KEGG: putative anaerobic C4-dicarboxylate transporter; TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: C4-dicarboxylate anaerobic carrier-like protein.
 
     0.567
UFO1_3607
KEGG: anaerobic c4-dicarboxylate antiporter; TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: C4-dicarboxylate anaerobic carrier-like protein.
 
     0.567
UFO1_3609
KEGG: putative C4-dicarboxylate transporter; TIGRFAM: anaerobic c4-dicarboxylate antiporter, DcuC family; PFAM: C4-dicarboxylate anaerobic carrier-like protein.
 
     0.534
glmS
Glucosamine--fructose-6-phosphate aminotransferase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
 
 0.485
UFO1_1745
PFAM: C4-dicarboxylate anaerobic carrier-like protein; KEGG: Dcu family anaerobic c4-dicarboxylate antiporter.
 
     0.476
UFO1_0161
PFAM: C4-dicarboxylate anaerobic carrier-like protein; KEGG: C4-dicarboxylate anaerobic carrier.
 
     0.472
UFO1_0285
PFAM: C4-dicarboxylate anaerobic carrier-like protein; KEGG: Dcu family anaerobic c4-dicarboxylate antiporter.
 
     0.460
UFO1_0286
KEGG: hypothetical protein; PFAM: Capsule synthesis protein, CapA; SMART: Capsule synthesis protein, CapA.
 
     0.446
Your Current Organism:
Pelosinus sp. UFO1
NCBI taxonomy Id: 484770
Other names: P. sp. UFO1, Pelosinus lilaceae
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