STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UFO1_3924SMART: PBS lyase HEAT domain protein repeat-containing protein; KEGG: Fe-S protein. (374 aa)    
Predicted Functional Partners:
UFO1_3925
Hypothetical protein; KEGG: 4Fe-4S ferredoxin.
 
     0.912
UFO1_3658
Hypothetical protein; KEGG: 4Fe-4S ferredoxin.
  
     0.759
UFO1_3926
SMART: regulatory protein MarR; KEGG: transcriptional regulator.
 
     0.543
UFO1_2867
PFAM: 4Fe-4S ferredoxin, iron-sulpur binding domain-containing protein; KEGG: (Fe-S)-binding protein.
  
     0.509
queA
S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
 
   
 0.428
Your Current Organism:
Pelosinus sp. UFO1
NCBI taxonomy Id: 484770
Other names: P. sp. UFO1, Pelosinus lilaceae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.