STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UFO1_4186TIGRFAM: CDP-glucose 4,6-dehydratase; KEGG: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase. (367 aa)    
Predicted Functional Partners:
UFO1_4187
TIGRFAM: glucose-1-phosphate cytidylyltransferase; KEGG: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase.
 
 0.997
UFO1_4185
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.995
UFO1_1092
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.971
UFO1_4182
PFAM: NAD-dependent epimerase/dehydratase; KEGG: NAD-dependent epimerase/dehydratase.
 
    0.925
UFO1_4181
PFAM: glycosyl transferase family 2; KEGG: glycosyltransferase involved in cell wall biogenesis.
 
 
 0.868
UFO1_4139
TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; KEGG: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase.
  
 
 0.834
rpsL
Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 0.821
rpsZ
Ribosomal protein S14, type Z; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
   
 0.820
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.818
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
 0.814
Your Current Organism:
Pelosinus sp. UFO1
NCBI taxonomy Id: 484770
Other names: P. sp. UFO1, Pelosinus lilaceae
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