STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UFO1_4629L-iditol 2-dehydrogenase; PFAM: Alcohol dehydrogenase GroES domain protein, Alcohol dehydrogenase zinc-binding domain protein; KEGG: zinc-type alcohol dehydrogenase; SMART: Polyketide synthase, enoylreductase. (339 aa)    
Predicted Functional Partners:
UFO1_4630
PFAM: Gluconate transporter; KEGG: gntT, putative high-affinity gluconate transporter.
     
 0.614
UFO1_4052
8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide.
 
  
 0.560
UFO1_4628
Transcriptional regulator, XRE family; KEGG: helix-turn-helix domain-containing protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
       0.487
UFO1_4505
PFAM: PTS system Galactitol-specific IIC component; KEGG: PTS system fructose/mannitol family transporter subunit IIC.
  
 0.480
UFO1_3936
KEGG: PTS system, galactitol-specific IIC subunit; TIGRFAM: PTS system, galactitol-specific IIC subunit; PFAM: PTS system Galactitol-specific IIC component.
  
 0.445
UFO1_0362
PFAM: PTS system Galactitol-specific IIC component; KEGG: putative PTS system galactitol-specific IIC component.
  
 0.422
UFO1_0828
PFAM: PTS system Galactitol-specific IIC component; KEGG: PTS system galactitol-specific transporter subunit IIC.
  
 0.420
UFO1_2990
Xylulokinase; KEGG: carbohydrate kinase FGGY; PFAM: Carbohydrate kinase, FGGY; Belongs to the FGGY kinase family.
 
  
 0.404
glgB
1,4-alpha-glucan-branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
  
 0.400
Your Current Organism:
Pelosinus sp. UFO1
NCBI taxonomy Id: 484770
Other names: P. sp. UFO1, Pelosinus lilaceae
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