STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BLA60_07040D-xylose ABC transporter ATP-binding protein; With RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)    
Predicted Functional Partners:
OLF12995.1
BMP family ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.997
OLF05700.1
Ribose ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.992
OLF11651.1
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.985
OLF12203.1
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.961
OLF10047.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.961
OLF14125.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.953
OLF14534.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.952
OLF05699.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.949
OLF06818.1
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.948
OLF11650.1
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.945
Your Current Organism:
Actinophytocola xinjiangensis
NCBI taxonomy Id: 485602
Other names: A. xinjiangensis, Actinophytocola sp. QAIII60, Actinophytocola xinjiangensis Guo et al. 2011, Amycolatopsis sp. QAIII60, CGMCC 4.4663, DSM 45854, NBRC 106673, strain QAIII60
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